PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.167500.1
Common NameCsa_1G547510, LOC101220733
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 381aa    MW: 41506.2 Da    PI: 6.1049
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.167500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30197255259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+++p++++itY++eHnh+
  Cucsa.167500.1 197 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTNPNMLVITYTSEHNHP 255
                     699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-30188257IPR003657WRKY domain
PROSITE profilePS5081132.535191257IPR003657WRKY domain
SuperFamilySSF1182904.45E-26194257IPR003657WRKY domain
SMARTSM007746.0E-37196256IPR003657WRKY domain
PfamPF031061.6E-25198255IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDNNNYQQAG DLTDVIRLSS APVAGHFSSE FSLDPFSGDR QLWSHLPADN SSMNFGDPLS  60
FPTRDPFLLP HFSPFNFASD GGGEGLAADD QPSNLLSHML QISPSSGDGV ISTPPCESLA  120
TAVGNSPRST SVRGGGGLVL PTGGSNSLCL MENSGIQISS PRNSANKRRK SQVKKVVCIP  180
APAPANSRSS SGEVVPSDLW AWRKYGQKPI KGSPYPRGYY RCSSSKGCSA RKQVERSRTN  240
PNMLVITYTS EHNHPWPTQR NALAGSTRSH PSRTTTATTA NKTSPKHERI NDILPTTTIK  300
EEEMDEDQMT DKATTTNDNQ EEGDHQDFPY DLIFTEFADQ MNDLEHDNNH DHNHHLSADP  360
LNNNMLMFSN HGFSAGNGEG X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-161952571374WRKY transcription factor 1
2lex_A3e-161982571977Probable WRKY transcription factor 4
1wj2_A3e-161982571977Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818920.0LN681892.1 Cucumis melo genomic scaffold, anchoredscaffold01595.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659293.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLA0A0A0LYP60.0A0A0A0LYP6_CUCSA; Uncharacterized protein
STRINGPGSC0003DMT4000390611e-81(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-62WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]